#!/bin/csh
set AMBERHOME="/usr/local/amber9"
set MDSTARTJOB=2
set MDENDJOB=10
set MDCURRENTJOB=$MDSTARTJOB
set MDINPUT=0

echo -n "Starting Script at: "
date
echo ""

while ( $MDCURRENTJOB <= $MDENDJOB )
   echo -n "Job $MDCURRENTJOB started at: "
   date
   @ MDINPUT = $MDCURRENTJOB - 1
   $AMBERHOME/exe/sander -O -i a-dna_md_1800ps.in \
                            -o a-dna_md$MDCURRENTJOB.out \
                            -p a-dna_wat.prmtop \
                            -c a-dna_md$MDINPUT.rst \
                            -r a-dna_md$MDCURRENTJOB.rst \
                            -x a-dna_md$MDCURRENTJOB.mdcrd
   gzip -9 -v a-dna_md$MDCURRENTJOB.mdcrd
   echo -n "Job $MDCURRENTJOB finished at: "
   date
   @ MDCURRENTJOB = $MDCURRENTJOB + 1
end
echo "ALL DONE"