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          Amber 9  SANDER                              2006
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| Run on 07/11/2007 at 16:40:12
  [-O]verwriting output

File Assignments:
|  MDIN: vac_md1_12Acut.in                                                     
| MDOUT: eqmecycl_vac_md1_12Acut.out                                           
|INPCRD: eqmecycl_vac_min.rst                                                  
|  PARM: eqmecycl.prmtop                                                       
|RESTRT: eqmecycl_vac_md1_12Acut.rst                                           
|  REFC: refc                                                                  
| MDVEL: mdvel                                                                 
|  MDEN: mden                                                                  
| MDCRD: eqmecycl_vac_md1_12Acut.mdcrd                                         
|MDINFO: mdinfo                                                                
|INPDIP: inpdip                                                                
|RSTDIP: rstdip                                                                

 
 Here is the input file:
 
#MD in vacuum, 12 angstrom cutoff                                              
&cntrl                                                                         
  imin = 0, ntb = 0,                                                           
  igb = 0, ntpr = 100, ntwx = 100,                                             
  ntt = 3, gamma_ln = 1.0,                                                     
  tempi = 300.0, temp0 = 300.0,                                                
  nstlim = 100000, dt = 0.001,                                                 
  cut = 12.0                                                                   
/                                                                              

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   1.  RESOURCE   USE: 
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| Flags:                                                                        
|    NONPERIODIC   ntb=0 and igb=0: Setting up nonperiodic simulation