------------------------------------------------------- Amber 7 SANDER Scripps/UCSF 2002 ------------------------------------------------------- | Mon Jun 11 11:51:30 2007 [-O]verwriting output File Assignments: | MDIN: CcO_rst_con_min6.in | MDOUT: CcO_rst_con_min6.out |INPCRD: CcO_rst_min5.restrt | PARM: CcO2.prmtop |RESTRT: CcO_rst_con_min6.restrt | REFC: CcO_rst_min5.restrt | MDVEL: mdvel | MDEN: mden | MDCRD: mdcrd |MDINFO: mdinfo |INPDIP: inpdip |RSTDIP: rstdip Here is the input file: Minimization with lower force constant on Gln 48 &cntrl imin=1, maxcyc=700, ntmin=2, nmropt=1, ntr=1, ntpr=2, ntb=0, cut=12, igb=1, intdiel=1, extdiel=2, saltcon=0.1, restraint_wt=5.0, restraintmask=':1-200', &end &wt type='REST', istep1=0, istep2=700, value1=1.0, value2=0.5, &end &wt type='END' &end LISTOUT=POUT DISANG=CONRST END END