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          Amber 8  SANDER                 Scripps/UCSF 2004
          -------------------------------------------------------

| Run on 02/13/2007 at 18:35:58
  [-O]verwriting output

File Assignments:
|  MDIN: ./RU5.min1                                                            
| MDOUT: ./RU5.outm1                                                           
|INPCRD: ./RU5.xyz                                                             
|  PARM: RU5.tpp                                                               
|RESTRT: ./RU5.rst1                                                            
|  REFC: ./RU5.xyz                                                             
| MDVEL: mdvel                                                                 
|  MDEN: mden                                                                  
| MDCRD: mdcrd                                                                 
|MDINFO: ./RU5.mdinfo                                                          
|INPDIP: inpdip                                                                
|RSTDIP: rstdip                                                                

 
 Here is the input file:
 
Minimizacion dejando libres los H                                              
 &cntrl                                                                        
   imin=1, ntr=0,                                                              
   cut=6, ntpr=100, scee=1.2, drms=0.0001,                                     
   maxcyc= 3000, ntmin=1, ncyc=1000, nsnb=25,                                  
   dielc = 4.0,                                                                
 &end                                                                          
 &ewald                                                                        
 use_pme=0, vdwmeth=0, eedmeth=4, ischrgd=1,                                   
 &end                                                                          

--------------------------------------------------------------------------------
   1.  RESOURCE   USE: 
--------------------------------------------------------------------------------

| Flags:                                                                        
 getting new box info from bottom of inpcrd
| peek_ewald_inpcrd: Box info not found in inpcrd

Warning: ischrgd has been retired.
A nonzero net charge due to roundoff error is always neutralized.

|Largest sphere to fit in unit cell has radius =  NaN