-------------------------------------------------------
          Amber 8  SANDER                 Scripps/UCSF 2004
          -------------------------------------------------------

| Run on 01/19/2007 at 14:35:01
  [-O]verwriting output

File Assignments:
|  MDIN: CcO_MD1Rst1.in                                                        
| MDOUT: CcO_MD1Rst1.out                                                       
|INPCRD: CcO_min3.restrt                                                       
|  PARM: CcO.prmtop                                                            
|RESTRT: CcO_MD1Rst1.restrt                                                    
|  REFC: CcO_min3.restrt                                                       
| MDVEL: mdvel                                                                 
|  MDEN: mden                                                                  
| MDCRD: CcO_MD1Rst1.mdcrd                                                     
|MDINFO: mdinfo                                                                
|INPDIP: inpdip                                                                
|RSTDIP: rstdip                                                                

 
 Here is the input file:
 
PGHS w/ ligand initial dynamics, 8.0 cut, constant Pressure                    
 &cntrl                                                                        
                                                                               
  ntx    = 1,       irest  = 0,     ntrx   = 1,      ntxo   = 1,               
  ntpr   = 5,       ntwx   = 0,     ntwv   = 0,      ntwe   = 5,               
                                                                               
  ntf    = 1,       ntb    = 0,                                                
  cut    = 12.0,    nsnb   = 10,                                               
  igb    = 0,                                                                  
                                                                               
  ibelly = 0,       ntr    = 0, nmropt = 1,                                    
                                                                               
  imin   = 0,                                                                  
  nstlim = 5,                                                                  
  nscm   = 0,                                                                  
  t      = 0.0,     dt     = 0.001,                                            
                                                                               
  temp0  = 20.0,   tempi  = 0.0,                                               
  ig     = 71277,   heat   = 0.0,                                              
  ntt    = 1,                                                                  
  tautp  = 0.2,                                                                
  vlimit = 15.0,                                                               
                                                                               
  ntp    = 0,       pres0  = 1.0,     comp   = 44.6,                           
  taup   = 0.2,     npscal = 1,                                                
                                                                               
  ntc    = 1,       tol    = 0.00001,                                          
  lastrst = 8000000,                                                           
                                                                               
 &end                                                                          
                                                                               
 &wt type='REST', istep1=0, istep2=5, value1=1.0,                              
          value2=1.0, &end                                                     
                                                                               
&wt='END' &end                                                                 
LISTOUT=POUT                                                                   
DISANG=RST1                                                                    
                                                                               
END                                                                            
                                                                               

--------------------------------------------------------------------------------
   1.  RESOURCE   USE: 
--------------------------------------------------------------------------------


Warning: heat has been retired.
  Check the Retired Namelist Variables Appendix in the manual.

| Flags: MPI                                                                    
|    NONPERIODIC   ntb=0 and igb=0: Setting up nonperiodic simulation
|Largest sphere to fit in unit cell has radius =    67.821