AMBER Archive (2007)

Subject: AMBER: angle between vectors

From: Mag. rer. nat. Hannes Wallnöfer (hannes.wallnoefer_at_uibk.ac.at)
Date: Fri Nov 30 2007 - 06:45:02 CST

Dear Amber users,

i want to analyze the postion of two aromatic rings in my trajectory of
a proteine MD simulation. I was able to define vectors perpendicular to
the ring planes. Is there a possibility to calculate the angle between
these two vectors? I didn´t find anything like that in the manual.

Thanks,
Hannes Wallnöfer
University of Innsbruck

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