AMBER Archive (2007)

Subject: AMBER: fragment parametrization tutorial?

From: Miguel Ortiz-Lombardía (ibdeno_at_gmail.com)
Date: Sat Sep 29 2007 - 13:53:05 CDT

Dear amber users,

I want to carry out binding free energy calculations for a system where one
protein contains a non-standard residue, N(6)-acetyl-lysine. Since I haven't
been able to locate parameters for such residue, I'd like to try and
generate them myself. Being quite new to AMBER, I'd appreciate if someone
could point me to a tutorial for this kind of procedure within AMBER.

Thanking you in advance for your help,

Miguel 

-- 
correo-e: ibdeno_at_gmail.com
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Je suis de la mauvaise herbe,
Braves gens, braves gens,
Je pousse en liberté
Dans les jardins mal fréquentés!

Georges Brassens

-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber_at_scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo_at_scripps.edu