AMBER Archive (2007)

Subject: RE: AMBER: MacOSX installation help

From: Ross Walker (ross_at_rosswalker.co.uk)
Date: Mon Sep 24 2007 - 09:26:35 CDT


I am a newbie to amber. I trying to install it in my MacPro with XEON Quad
core processor. I issued the following configuration command,

./configure ifort_x86_64

I changed all the gcc to icc and cpp to icpc.

You probably don't want to do this unless you really know what you are
doing. For one cpp is the "c preprocessor" not the c++ compiler. Thus it
should be left as cpp. I also would not change gcc to icc unless things
really didn't work with gcc.
 
When I issue the make command I am strucking with the following,

############################################################################
############

make[2]: `nxtsec.o' is up to date.
 
First off this looks like you didn't make clean since a lot of compilation
is being skipped. Or I just assume that you built it once until it died and
then issues make again to get the error message. As it looks right now you
should have pretty much everything built except leap.
 
../../../config.h:86: warning: ignoring old commands for target `.c.o'
icc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -m64
-O2 -o MapAg.o MapAg.c
icc -c -I/usr/X11R6/include -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -m64
-O2 -o WcActCB.o WcActCB.c
WcActCB.c(22): catastrophic error: could not open source file
"X11/IntrinsicP.h"
  #include <X11/IntrinsicP.h>
 
Check that you have the X11 development libraries installed and that the
file /usr/X11R6/include/X11/IntrinsicP.h exists. On Redhat EL4 this is part
of xorg-x11-devel:
 
[07:25][xxxxxxxxxxx:0.14][xxx:~]$ rpm -qf
/usr/X11R6/include/X11/IntrinsicP.h
xorg-x11-devel-6.8.2-1.EL.19
 
Good luck,
 
Ross
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|\oss Walker

| HPC Consultant and Staff Scientist |
| San Diego Supercomputer Center |
| Tel: +1 858 822 0854 | EMail:- ross_at_rosswalker.co.uk |
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