AMBER Archive (2007)

Subject: AMBER: Water Question

From: Eddie Men (pckboy_at_gmail.com)
Date: Sun Sep 23 2007 - 03:09:21 CDT

Dear Amber users

What is the 'best' water model (explicit) for a protein simulation?. I
am using by the way the leaprc.ff03
force field model (someone may want to suggest a different one?. Please
do it before I start a million hour
simulation and then have the reviewers reject my paper, lol).
Is there any consensus as to what model should NOT be used?. Does some
model have
more impact in my calculations than other?. Which one is more accurate?.

Thanks in advance

Eddie
 
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber_at_scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo_at_scripps.edu