AMBER Archive (2007)

Subject: AMBER: protocols for high pressure simulation

From: brmeher_at_iitg.ernet.in
Date: Tue Aug 28 2007 - 10:23:00 CDT

Dear AMBER users.
I want to perform a simulation of protein under high pressure. So my
question here is that is there any standard protocol where pressure can be
raised to a higher level using AMBER force field OR some tricky way to
perform high pressure simulation ? Also whether the Berendsen coupling is
appropriate for high pressure simulation or not ? Can any body please help
me in this regard.

Thank you for your suggestions in advance.

regards
B R Meher
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