AMBER Archive (2007)

Subject: Re: AMBER: How to use AMBER Parameter Database ?

From: David A. Case (case_at_scripps.edu)
Date: Thu Aug 23 2007 - 11:53:55 CDT

On Tue, Aug 21, 2007, Qiang Zhong wrote:

> I have a protein complex which is consist of ADP ,Ca2+ and THP. I find
> parameter file of these non-standard residue in
> http://pharmacy.man.ac.uk/amber/. But I have some problem , THP is simple,
> I just need use command:loadOff amber_thp.lib. It is ok, but ADP and Ca2+ is
> not like THP, They are .prep format. I don't know how to use it.

Use loadAmberPrep to load prep files.

...dac

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