AMBER Archive (2007)

Subject: AMBER: xLeap "Could not find type" error

From: WANG,YING (wangying_at_ufl.edu)
Date: Wed Aug 22 2007 - 09:04:37 CDT

HI, DEAR AMBER MEMBERS,
I also have the "could not find type" problem when I run the
xleap. The message as below:
> xx=loadpdb "xx.pdb"
loading pdb file: ./xx.pdb
created a new atom named: H within residue: .R<NPHE 1>
...
...
Leap added 19 missing atoms according to residue templates:
 19H/long pairs
The file contained 17 atoms not in residue templates

> saveamberparm xx xx.prmtop xx.inpcrd
Checking unit.
FATAL: ATOM .R<NPHE 1>.A<H 23>does not have a type
...
...
Failed to generate parameters

This pdb file was downloaded from PDB bank. I check it but cannot
figure out what's happen............. Could you help me? Thanks
very much!! 

--
WANG,YING
Mechanical and Aerospace Engineering
University of Florida

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