AMBER Archive (2007)

Subject: AMBER: xLeap "Could not find type" error

From: Lili Peng (lilipeng_at_gmail.com)
Date: Tue Aug 21 2007 - 14:28:46 CDT

Dear AMBER users,

I am trying to load a .MOL2 file in xleap, but when I try to save the prmtop
and inpcrd files, I get the error messages:

"For atom: .R<GLU2 6>.A<CA 2> Could not fine type: C.3
For atom: .R<GLU2 6>.A<CB 3> Could not fine type: C.3
For atom: .R<GLU2 6>.A<CG 4> Could not fine type: C.3
For atom: .R<GLU2 6>.A<CD 5> Could not fine type: C.2
For atom: .R<GLU2 6>.A<OE1 6> Could not fine type: O.2
For atom: .R<GLU2 6>.A<C 7> Could not fine type: C.2
..."

and so on..

What am I doing wrong? I Googled the problem and I got some hits on missing
force field parameters - is this the case?

Any advice would be greatly appreciated. I have also attached my .MOL2 file
should it be helpful.

Thanks and regards,
Lili


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