AMBER Archive (2007)

Subject: AMBER: command tleap is not normal

From: Qiang Zhong (zqiang320_at_webmail.hzau.edu.cn)
Date: Tue Aug 21 2007 - 03:12:44 CDT

Dear Amber users:
            I am preparing top file of protein simulation.when I execute tleap
command, I get
below information ,it is not like tutorial .
[t_at_localhost ~]$ tleap
-I: Adding /home/internet/Soft/Amber/amber9/dat/leap/prep to search path.
-I: Adding /home/internet/Soft/Amber/amber9/dat/leap/lib to search path.
-I: Adding /home/internet/Soft/Amber/amber9/dat/leap/parm to search path.
-I: Adding /home/internet/Soft/Amber/amber9/dat/leap/cmd to search path.

Welcome to LEaP!
(no leaprc in search path)
>

in tutorial file, normal result should be:

Welcome to LEaP!
Sourcing leaprc: /amber/dat/leap/cmd/leaprc
Log file: ./leap.log
Loading parameters: /amber/dat/leap/parm/parmME.dat
Loading library: /amber/dat/leap/lib/all_nucleic94.lib
Loading library: /amber/dat/leap/lib/all_aminoME.lib
Loading library: /amber/dat/leap/lib/all_aminoctME.lib
Loading library: /amber/dat/leap/lib/all_aminontME.lib
Loading library: /amber/dat/leap/lib/ions94.lib
Loading library: /amber/dat/leap/lib/water.lib
>

Could somebody tell me what the problem with it,and what shall I do?
Thank you very much!

-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber_at_scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo_at_scripps.edu