AMBER Archive (2007)

Subject: AMBER: Cygwin error

From: Lili Peng (lilipeng_at_gmail.com)
Date: Wed Aug 08 2007 - 16:33:22 CDT


Hi,

I'm trying to run AMBER9 from my desktop. I have all the AMBER programs
specified in a folder in my documents directory. However, when I tried to
open the xleap program, I'm getting an error message stating that no file or
directory exists. My commands in my Cygwin bash shell are the following:

$ export AMBERHOME=H:/Documents_and_Settings/Lili/My_Documents/amber9
$ echo $AMBERHOME
H:/Documents_and_Settings/Lili/My_Documents/amber9
$ $AMBERHOME/exe/xleap -s -f $AMBERHOME/dat/leap/cmd/leaprc.ff99
bash: H:/Documents_and_Settings/Lili_Peng/My_Documents/amber9/exe/xleap: No
such file or directory

Then I type in:
$ cd $AMBERHOME
bash: cd: H:/Documents_and_Settings/Lili/My_Documents/amber9: No such file
or directory

I even tried adding a slash after the directory amber9:
$ export AMBERHOME=H:/Documents_and_Settings/Lili/My_Documents/amber9/
bash: cd: H:/Documents_and_Settings/Lili/My_Documents/amber9: No such file
or directory

What am I doing wrong? Please be aware that I'm running all of this through
startxwin.bat from a Cygwin bash shell by typing
"/usr/X11R6/bin/startxwin.bat".

Thank you,
Lili

-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber_at_scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo_at_scripps.edu