AMBER Archive (2007)

Subject: AMBER: force field for irregulate DNA ends

From: Hu, Shaowen (JSC-SK)[USRA] (Shaowen.Hu-1_at_nasa.gov)
Date: Sat Aug 04 2007 - 13:20:42 CDT

Dear Amber Users,

Does anybody have experience on simulation of DNA with irregular ends, such as 3’-phosphate, 3’-phosphoglycolate, and 3’-phosphoglycaldehyde ends? Thanks.

Shaowen

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