AMBER Archive (2007)

Subject: Re: AMBER: (no subject)

From: Syed Tarique Moin (tarisyed_at_yahoo.com)
Date: Sat Aug 04 2007 - 09:07:23 CDT

I have the program xmgrace to draw a graph, so suggest me to calcute the ps / day.
   
  Now i can understand that what i have to do. can i extract or find out information about ps/day from the output file of sander.
   
  Regards

Carlos Simmerling <carlos.simmerling_at_gmail.com> wrote:
  do you have a program to make graphs?
if yes, then you should run a short test with different
number of processors. convert the run time to
ps/day as we explained before. do this for different #
processors and make a table, then plot it.
You'll have to be more specific about which step is confusing.

On 8/4/07, Syed Tarique Moin wrote:
> Hello
>
> Yeah ! The same thing i want to to do i.e. ps/day vs number of processors in
> the form of graphical representation.
>
> Regards
>
> Gustavo Seabra wrote:
>
> I'm nut sure I understand what you mean, but I'd think you want to do a plot
> with "ps/day vs. number of processors" , no? ps/day alone will not give you
> anything to plot.
>
> Gustavo.
>
>
>
> ________________________________
> From: owner-amber_at_scripps.edu [mailto:owner-amber_at_scripps.edu] On Behalf Of
> Syed Tarique Moin
> Sent: Thursday, August 02, 2007 8:36 AM
> To: amber_at_scripps.edu
> Subject: Re: AMBER: (no subject)
>
>
>
> Hello,
>
> Yeah! but i want to know how to manipulate these in graphical representation
> as ps/day.
>
> Kindly guide me
>
>
> Syed Tarique Moin,
> Junior Research Fellow,
> H.E.J. Research Institute of Chemistry,
> International Center for Chemical and Biological Sciences,
> University of Karachi, Karachi-75720, Pakistan
>
> tarisyed_at_yahoo.com
> tarisyed_at_hotmail.com
>
> ________________________________
> Park yourself in front of a world of choices in alternative vehicles.
> Visit the Yahoo! Auto Green Center.
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Syed Tarique Moin,
Junior Research Fellow,
H.E.J. Research Institute of Chemistry,
International Center for Chemical and Biological Sciences,
University of Karachi, Karachi-75720, Pakistan

tarisyed_at_yahoo.com
tarisyed_at_hotmail.com
       
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