AMBER Archive (2007)

Subject: Re: AMBER: secstruct command

From: Tim Meyer (tim_at_mmb.pcb.ub.es)
Date: Fri Jul 20 2007 - 08:55:47 CDT

> book about peptides, I've calculated the % of the secondary structure
> and the results are not the same. I don't know if Ptraj use a wide

i also find a few % difference between stride (dihedrals) dssp/ptraj
(h-bonds)

this article might interest you:
Protein secondary structure assignment revisited: a detailed analysis of
different assignment methods

BMC Structural Biology 2005, 5:17

tim
-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber_at_scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo_at_scripps.edu