AMBER Archive (2007)

Subject: Re: AMBER: help with phosphotyrosine

From: David A. Case (case_at_scripps.edu)
Date: Mon Jul 16 2007 - 13:11:51 CDT

On Mon, Jul 16, 2007, Samantha Kaye wrote:

> I realise this question has been asked before but I can't find a definitive
> answer, how do I parameterise a phosphotyrosine residue?

Look at the "contributed parameters" database at the Amber web sight. You
will download a library file for phosphotyrosine from there, and load that
into LEaP before loading your pdb file.

...good luck...dac

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