AMBER Archive (2007)

Subject: AMBER: Atoms in conatct to a specific atoms during MD

From: Rafi Ahmad (Rafi.Ahmad_at_fagmed.uit.no)
Date: Mon Jul 16 2007 - 08:23:38 CDT

Dear Amber Users,

 

I have done a MD simulation with MD.

 

I am trying to find out about all other atoms that are in certain radius
to a specific atom during the complete MD simulations.

 

I went through the AMBER manual and mailing list, but couldn't find a
solution (or may be I just missed it).

 

Can you plz point me to a potential solution to this problem.

 

Thanks in advance.

 

Regards

 

Rafi

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