AMBER Archive (2007)

Subject: Re: AMBER: antechamber

From: David A. Case (case_at_scripps.edu)
Date: Mon Jul 09 2007 - 09:41:23 CDT

On Mon, Jul 09, 2007, Marie Brut wrote:

> I prepared a mol2 file containing the coordinates of a small double strand
> of DNA. Then, I used antechamber to generate a prepin file but here is the
> problem : until the end of the first strand, everything is normal, but after
> the prepin file is like this :

Antechamber is designed to work on single residues only. It won't work for
multiple strand molecules. You will need to split the input for antehchamber
up into pieces, then recombine them later in leap.

....dac

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