AMBER Archive (2007)

Subject: Re: AMBER: Fwd: antechamber save prmtop inpcrd

From: David A. Case (case_at_scripps.edu)
Date: Wed Jul 04 2007 - 15:15:21 CDT

On Wed, Jul 04, 2007, Francesco Pietra wrote:

>
> In both cases (sustiva and my own molecule) the saveparm ... command reported
> on the xleap screen (last visible portion for ) the same substance. For my
> molecule:
>
> ........
> <EQA 1> : C39 C41 C40 H43
> <EQA 1> : C40 C38 C39 O10
>
> total 30 improper torsions applied
>
> 28 improper torsions in old prep form
>
> Building H-Bond parameters.
>
> Not masking per-residue atom chain types.
>
> Marking per-residue atom chain types.
> (Residues lacking connect 0/connect 1-
> these don't have chain type marked:
>
> res total affected
>
> WAT 1667
> )
>
> (no restraints)

This is all normal. Where does it say "not saved"???

>
> I quitted from xleap by killing the X system
> (Ctrl-Alt-Backspace)

Typing the command "quit" should also work.

...dac

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