AMBER Archive (2007)

Subject: AMBER: Serial "make" failure with xleap

From: Francesco Pietra (chiendarret_at_yahoo.com)
Date: Fri Jun 29 2007 - 12:17:39 CDT

Hi all. Thanks for considering this installation issue. I agree with David's
comments below and Bud's comments before. I must also add that, although not
needed, a better look at the info on my system reveals that OpenGL is available
on my system. What is only lacking is 3D acceleration. It is at 2D, am fine at
that.

On reading the comments and amber's manual, I would still be happy if xleap
succumbs to "make". Debian is a standard linux, so this failure must be due to
something that can be put in order. Though, I can't ask for so much attention
to my system. The only move from my side is to recollect information - that is
now sparse on the mailing list - on both the "make" attempt and the X system
aid to perhaps someone discovering ON THE FLY where the remedy can be. It might
help future debian users, if the issue has to do with debian at all.

Sincere thanks to all in any case, I look forward enjoying with amber as soon
as possible.

francesco

The information follows:

MAKE ISSUE

Other than chown, also run

chgrp -R username

on /usr/local/amber9

cd $AMBERHOME/src/

I removed previous config.h

 ./configure -static ifort_x86_64

This created new config.h

 make clean

 make

After a long session it exited with Error 2

Those errors that I can see on the screen comprise:

WcActCB.c:1448: error: expected declaration specifiers before XEvent.

WcActCB.c:1448: error: expected declaration specifiers before Cardinal.

WcActCB.c: In function WcDynamicActionACT:

WcActCB.c:1450: error: expected declaration specifiers before Widget.

WcActCB.c:1450: error: expected declaration specifiers before XEvent.

WcActCB.c:1450: error: expected declaration specifiers before Cardinal.

WcActBC.c: In function WcDynamicCallbackACT:

WcActCB.c:1452: error: expected declaration specifiers before Widget.

WcActCB.c:1452: error: expected declaration specifiers before XEvent.

WcActCB.c:1452: error: expected declaration specifiers before Cardinal.

WcActBC.c: In function WcRegisterWcActions:

WcActCB.c:1461: error: expected declaration specifiers before XtAppContext.

WcActCB.c:1463: error: expected = , , , ;, asm or __attribute__ befor WcActions

WcActCB.c:1463 error: WcActions undeclared (first use in this function).

WcActCB.c:1463 error: expected expression before ] token.

WcActCB.c:1536: error: expected = , , , ;, asm or __attribute__ before already.

WcActCB.c:1536: error: already undeclared (first use in this function).

make[2]: *** [WcActB.o] Error 1.

make[2]: Leaving dir '/usr/local/amber9/src/leap/src/Wc'

make [1]: *** [install] Error 2

make[1]: Leaving dir '/usr/local/amber9/src/leap'

make: *** [serial] Error 2
-

If relevant, I have seen during the process calling "gcc" and "g++" (for
openmpi I have used intel for both fortran, C and C++) (and all intels are
activated at booth from my .bashrc).

______________________
TEST

cd $AMBEROME/test

make test.serial

All PASSED except leap:

cd leap: ./Run.tleap

Error: ./tleap -> ../../exe/teLeap does not exit

make: *** [test.leap] Error 1
_________________

INFO ON X SYSTEM

francesco_at_deb64:~$ lspci |egrep -i '(video|vga|display)'
81:00.0 VGA compatible controller: nVidia Corporation NV43 [GeForce 6600] (rev
a 2)
francesco_at_deb64:~$

francesco_at_deb64:~$ awk '/Section
"(Module|Device|ServerFlags|extensions)"/,/EndSection/' /etc/X11/xorg.conf
Section "Module"
        Load "bitmap"
        Load "dbe"
        Load "ddc"
        Load "dri"
        Load "extmod"
        Load "freetype"
        Load "glx"
        Load "int10"
        Load "record"
        Load "v4l"
        Load "vbe"
EndSection
Section "Device"
        Identifier "nVidia Corporation NV43 [GeForce 6600] (rev a2)"
        Driver "nv"
# BusID "PCI:129:0:0"

EndSection
francesco_at_deb64:~$

The following was run from console on gnome, that is when both X and gnome had
been started

francesco_at_deb64:~$ egrep '^\((EE|WW)\)' /var/log/Xorg.0.log (WW) The directory
"/usr/X11R6/lib/X11/fonts/misc" does not exist.
(WW) The directory "/usr/share/fonts/X11/cyrillic" does not exist.
(WW) The directory "/usr/X11R6/lib/X11/fonts/cyrillic" does not exist.
(WW) The directory "/usr/X11R6/lib/X11/fonts/100dpi/" does not exist.
(WW) The directory "/usr/X11R6/lib/X11/fonts/75dpi/" does not exist.
(WW) The directory "/usr/X11R6/lib/X11/fonts/Type1" does not exist.
(WW) The directory "/usr/X11R6/lib/X11/fonts/100dpi" does not exist.
(WW) The directory "/usr/X11R6/lib/X11/fonts/75dpi" does not exist.
(WW) The directory "/var/lib/defoma/x-ttcidfont-conf.d/dirs/TrueType" does not
exist.
(WW) (1024x768,Generic Monitor) mode clock 94.5MHz exceeds DDC maximum 80MHz
(WW) (1152x864,Generic Monitor) mode clock 108MHz exceeds DDC maximum 80MHz
(WW) (1280x960,Generic Monitor) mode clock 108MHz exceeds DDC maximum 80MHz
(WW) (1280x960,Generic Monitor) mode clock 148.5MHz exceeds DDC maximum 80MHz
(WW) (1280x1024,Generic Monitor) mode clock 108MHz exceeds DDC maximum 80MHz
(WW) (1280x1024,Generic Monitor) mode clock 135MHz exceeds DDC maximum 80MHz
(WW) (1280x1024,Generic Monitor) mode clock 157.5MHz exceeds DDC maximum 80MHz
(WW) (1600x1200,Generic Monitor) mode clock 162MHz exceeds DDC maximum 80MHz
(WW) (800x600,Generic Monitor) mode clock 81MHz exceeds DDC maximum 80MHz
(WW) (1600x1200,Generic Monitor) mode clock 175.5MHz exceeds DDC maximum 80MHz
(WW) (800x600,Generic Monitor) mode clock 87.75MHz exceeds DDC maximum 80MHz
(WW) (1600x1200,Generic Monitor) mode clock 189MHz exceeds DDC maximum 80MHz
(WW) (800x600,Generic Monitor) mode clock 94.5MHz exceeds DDC maximum 80MHz
(WW) (1600x1200,Generic Monitor) mode clock 202.5MHz exceeds DDC maximum 80MHz
(WW) (800x600,Generic Monitor) mode clock 101.25MHz exceeds DDC maximum 80MHz
(WW) (1600x1200,Generic Monitor) mode clock 229.5MHz exceeds DDC maximum 80MHz
(WW) (800x600,Generic Monitor) mode clock 114.75MHz exceeds DDC maximum 80MHz
(WW) (1792x1344,Generic Monitor) mode clock 204.8MHz exceeds DDC maximum 80MHz
(WW) (896x672,Generic Monitor) mode clock 102.4MHz exceeds DDC maximum 80MHz
(WW) (1792x1344,Generic Monitor) mode clock 261MHz exceeds DDC maximum 80MHz
(WW) (896x672,Generic Monitor) mode clock 130.5MHz exceeds DDC maximum 80MHz
(WW) (1856x1392,Generic Monitor) mode clock 218.3MHz exceeds DDC maximum 80MHz
(WW) (928x696,Generic Monitor) mode clock 109.15MHz exceeds DDC maximum 80MHz
(WW) (1856x1392,Generic Monitor) mode clock 288MHz exceeds DDC maximum 80MHz
(WW) (928x696,Generic Monitor) mode clock 144MHz exceeds DDC maximum 80MHz
(WW) (1920x1440,Generic Monitor) mode clock 234MHz exceeds DDC maximum 80MHz
(WW) (960x720,Generic Monitor) mode clock 117MHz exceeds DDC maximum 80MHz
(WW) (1920x1440,Generic Monitor) mode clock 297MHz exceeds DDC maximum 80MHz
(WW) (960x720,Generic Monitor) mode clock 148.5MHz exceeds DDC maximum 80MHz
(WW) (1280x768,Generic Monitor) mode clock 80.14MHz exceeds DDC maximum 80MHz
(WW) (1280x800,Generic Monitor) mode clock 83.46MHz exceeds DDC maximum 80MHz
(WW) (1152x864,Generic Monitor) mode clock 121.5MHz exceeds DDC maximum 80MHz
(WW) (1400x1050,Generic Monitor) mode clock 122MHz exceeds DDC maximum 80MHz
(WW) (1400x1050,Generic Monitor) mode clock 151MHz exceeds DDC maximum 80MHz
(WW) (1400x1050,Generic Monitor) mode clock 155.8MHz exceeds DDC maximum 80MHz
(WW) (1400x1050,Generic Monitor) mode clock 184MHz exceeds DDC maximum 80MHz
(WW) (700x525,Generic Monitor) mode clock 92MHz exceeds DDC maximum 80MHz
(WW) (1440x900,Generic Monitor) mode clock 108.84MHz exceeds DDC maximum 80MHz
(WW) (1600x1024,Generic Monitor) mode clock 106.91MHz exceeds DDC maximum 80MHz
(WW) (1680x1050,Generic Monitor) mode clock 147.14MHz exceeds DDC maximum 80MHz
(WW) (1920x1200,Generic Monitor) mode clock 193.16MHz exceeds DDC maximum 80MHz
(WW) (960x600,Generic Monitor) mode clock 96.58MHz exceeds DDC maximum 80MHz
(WW) (1920x1200,Generic Monitor) mode clock 230MHz exceeds DDC maximum 80MHz
(WW) (960x600,Generic Monitor) mode clock 115MHz exceeds DDC maximum 80MHz
(WW) (1920x1440,Generic Monitor) mode clock 341.35MHz exceeds DDC maximum 80MHz
(WW) (960x720,Generic Monitor) mode clock 170.675MHz exceeds DDC maximum 80MHz
(WW) (2048x1536,Generic Monitor) mode clock 266.95MHz exceeds DDC maximum 80MHz
(WW) (1024x768,Generic Monitor) mode clock 133.475MHz exceeds DDC maximum 80MHz
(WW) (2048x1536,Generic Monitor) mode clock 340.48MHz exceeds DDC maximum 80MHz
(WW) (1024x768,Generic Monitor) mode clock 170.24MHz exceeds DDC maximum 80MHz
(WW) (2048x1536,Generic Monitor) mode clock 388.04MHz exceeds DDC maximum 80MHz
(WW) (1024x768,Generic Monitor) mode clock 194.02MHz exceeds DDC maximum 80MHz
(WW) NV(0): Failed to set up write-combining range (0xd0000000,0x10000000)
(EE) AIGLX: Screen 0 is not DRI capable
francesco_at_deb64:~$
_______________________
THE END

--- "David A. Case" <case_at_scripps.edu> wrote:

> On Thu, Jun 28, 2007, Francesco Pietra wrote:
>
> > As to why xleap resisted compilation, I remark that the X system - though
> > perfectly functioning at 2D acceleration - lacks OpenGL,
>
> Bud's comments were excellent, but I will also point out that xleap has
> no need for openGL. I can't remember your original problem anymore, but
> it must be somewhere else. xleap was designed(!) to use almost nothing
> except
> xlib. The problems it didn't aniticpate (having been written in the 1980's)
> were that both 32 and 64 bit X libraries would be available (or not
> available)
> on any given machine and that getting everything in sync could sometimes
> be tricky.
>
> ...dac
>
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