AMBER Archive (2007)

Subject: Re: AMBER: "FATAL: Atom xxx does not have a type."

From: David A. Case (case_at_scripps.edu)
Date: Tue Jun 26 2007 - 17:20:21 CDT

On Tue, Jun 26, 2007, Fred Baba wrote:

> UN2 = loadpdb "10gs_protein.pdb"
> loadamberprep 10gs_protein.prepin

Do the above two commands in the opposite order: you need to load the prepin
file before loading the pdb file

> # Can only make the prep file with Leap.

I don't understand this exactly: how did you create the prepin file in leap?
How big a molecule are you trying to make a prepin file for? A prepin file
would ordinarily be for a single residue, not for an entire protein.

....dac

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