AMBER Archive (2007)

Subject: Re: AMBER: 5 Ligands and 1 Protein

From: David A. Case (case_at_scripps.edu)
Date: Fri Jun 22 2007 - 10:05:28 CDT

On Thu, Jun 21, 2007, Colby C wrote:

> I need help with the naming and order.

Don't be afraid to experiment! LEaP will tell you if it has problems
understanding your pdb file.

>
> The 4th column in the 13,000 atom protein ....

This sounds like a very large problem to tackle if you don't have much
experience using Amber. You might want to consider getting some experience on
much smaller systems first.

....dac

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