AMBER Archive (2007)

Subject: Re: AMBER: amber equation of ff99

From: Carlos Simmerling (carlos.simmerling_at_gmail.com)
Date: Tue Apr 24 2007 - 11:18:57 CDT

yes it is the same, only the parameters differ.

On 4/24/07, Chengwen Chen <chenchengwen_at_gmail.com> wrote:
> Dear Amber user,
>
> In Amber website, the basic additive form of amber equation for Cornell et
> al. 1995 force field include just bonds, angles, dihedrals and nonbonded
> pairs, i.e. omitting polarization as well as the hydrogen
> bonding 10-12 term. I wonder if the equation for ff99 force field is the
> same ? Since I want to use the equation in my thesis, so I need an accurate
> answer.
>
> Thank you very much!
>
> Best Wishes,
> Chen Chengwen 

-- 
===================================================================
Carlos L. Simmerling, Ph.D.
Associate Professor                 Phone: (631) 632-1336
Center for Structural Biology   Fax:   (631) 632-1555
CMM Bldg, Room G80
Stony Brook University        E-mail: carlos.simmerling_at_gmail.com
Stony Brook, NY 11794-5115
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