AMBER Archive (2007)

Subject: Re: AMBER: membrane simulation

From: nag raj (nagaraju_chem_at_yahoo.co.in)
Date: Wed Apr 18 2007 - 21:53:27 CDT

Dear Amber users,
                  Can you help me in getting
parameters for DOPC lipid bilayer. Any suggestions is
appriciated.
        Thank you in advance,
                                with regards,
                                 Mulpuri.
--- Florian Haberl
<Florian.Haberl_at_chemie.uni-erlangen.de> wrote:

> Dear Balazs Jojart & Tamas A. Martinek,
>
> On Sunday, 15. April 2007 20:06, Jojart Balazs
> wrote:
> > Dear Amber users,
> >
> > we've tested the GAFF performance in fully
> hidrated lipid bilayer
> > simulations. As David A. Case suggested, we would
> like to share our
> > experinece. The article is available:
> >
>
http://www3.interscience.wiley.com/cgi-bin/abstract/114209721/ABSTRACT.
> > We hope that out results help to everybody, who
> would like to simulate
> > membrane bilayers.
>
> are you planning to release pre equilibrated
> structures of your membrans on
> the web, like Tielman has done for gromos based
> membrans?
>
> (link:
>
http://moose.bio.ucalgary.ca/index.php?page=Structures_and_Topologies)
>
>
>
> >
> > Balazs Jojart & Tamas A. Martinek
> > Unversity of Szeged
> >
> >
>
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>
> Greetings,
>
> Florian
>
> --
>
-------------------------------------------------------------------------------
> Florian Haberl
> Computer-Chemie-Centrum
> Universitaet Erlangen/ Nuernberg
> Naegelsbachstr 25
> D-91052 Erlangen
> Telephone: +49(0) − 9131 − 85 26581
> Mailto: florian.haberl AT chemie.uni-erlangen.de
>
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