AMBER Archive (2007)

Subject: Re: AMBER: using glycam04 parameters

From: Austin B. Yongye (ayongye_at_chem.uga.edu)
Date: Wed Apr 18 2007 - 11:03:35 CDT

> I have used that site, but I need to use Xleap to solvate the system, and
> it does not recognize the C1-OH, even when created by that site.

You can get the .top/.crd files,etc from www.glycam.com. The site also
gives you the option of solvating your system. Anyway, if you are going to
solvate the system using x/tleap, you need the parameter and prep files on
your local machine. So, did you download the latest parameters and
prepfiles?
You can post your leap input files, so we know what your are doing.
Austin-
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