AMBER Archive (2007)

Subject: AMBER: ptraj secstruct core dumped error

From: vijayaraj_at_clri.info
Date: Tue Apr 17 2007 - 08:45:04 CDT

hello,

 I have a molecular dynamics trajectory output file with 500MB size. I
tried to run the ptraj secstruct analysis for the above trajectory. I got
error report as "Aborted core dumped" and i also got stackdump.exe file.
Other commands in prtraj such as hbond, rmsd were working properly.
Kindly give sugession to solve this problem.

with this i have attached input and output file of ptraj,

Regards,
vijay


  • application/octet-stream attachment: ptraj.in

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