AMBER Archive (2007)

Subject: AMBER: sander (AMBER 9) and -y flag -- not working?

From: David Mobley (dmobley_at_gmail.com)
Date: Tue Apr 10 2007 - 13:22:39 CDT

All,

I'm trying to use the -y flag of Sander, as described on pages 87 and
90 of the AMBER 9 manual, to evaluate certain energies of a stored
trajectory using slightly modified run parameters. I've set imin=5.
However, Sander complains that -y is an unknown flag.

Is the -y flag obsolete, or is there a bug, or...?

Thanks,
David
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