AMBER Archive (2007)

Subject: AMBER: amber 9 installation: broken pipe

From: Stern, Julie (jvstern_at_bnl.gov)
Date: Thu Apr 05 2007 - 18:54:16 CDT

My parallel installation barfed. Error messages below. I'm on a linux cluster.
Can anyone tell me what went wrong and what do I do with a broken pipe (call a plumber? )?
Thanks.
 
 
bgc 301% make test.parallel > paralleltest2.log
[0] MPI Abort by user Aborting program !
[0] Aborting program!
make[1]: [test.sander.BASIC] Error 1 (ignored)
[0] MPI Abort by user Aborting program !
[0] Aborting program!
/opt/mpich-1.2.6-icc/bin/mpirun: line 1: 21764 Broken pipe /home/jstern/amber9_parallel/exe/sander.MPI "-O" "-i" "gbin" "-c" "eq1.x" "-o" "mdout.column_fft" -p4pg /home/jstern/amber9_parallel/test/4096wat/PI21642 -p4wd /home/jstern/amber9_parallel/test/4096wat
make: *** [test.sander.BASIC.MPI] Error 1

 
In the log file:
cd bintraj; ./Run.bintraj
sander and ptraj: test sander netCDF output and ptraj netCDF input
p0_21633: p4_error: : 1
p2_2873: p4_error: net_recv read: probable EOF on socket: 1
  ./Run.bintraj: Program error
make[1]: Leaving directory `/home/jstern/amber9_parallel/test'
export TESTsander=/home/jstern/amber9_parallel/exe/sander.MPI; cd 4096wat; ./Run
.column_fft
p0_21764: p4_error: : 1
Broken pipe
  ./Run.column_fft: Program error
Broken pipe

-----------------------------------------------------------------------
The AMBER Mail Reflector
To post, send mail to amber_at_scripps.edu
To unsubscribe, send "unsubscribe amber" to majordomo_at_scripps.edu