AMBER Archive (2007)

Subject: Re: AMBER: Parameter file for Dipeptide

From: Carlos Simmerling (carlos.simmerling_at_gmail.com)
Date: Tue Mar 27 2007 - 08:20:55 CST

I suggest working through the Amber tutorials if you are new to it.
One of the tutorials explicitly covers non-standard residues.
These are accessible from the amber web page.

On 3/27/07, Neelanjana Sengupta <senguptan_at_gmail.com> wrote:
> Hello AMBER experts,
>
> I am completely new to AMBER. I need to obtain AMBER paramters for Amino
> isobutyric acid (AIB) dipeptide, for which I have a CHARMM type pdb file.
> Could someone please give me pointer son how to proceed?
>
> Thanks,
> --
> ****************************************
> Neelanjana Sengupta, PhD student
> Dept. of Chemistry
> Univ. of California-Irvine
> Irvine, CA 92697
> USA
> Phone: 1-949-824 9921
> email: sengupta_at_uci.edu
> ****************************************
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