AMBER Archive (2007)

Subject: Re: AMBER: Problem related simulation of dimer

From: Carlos Simmerling (carlos.simmerling_at_gmail.com)
Date: Thu Mar 15 2007 - 05:38:57 CST

seems like it should work, maybe if you look at the leap.log you'll
see what it is doing.

On 3/15/07, priya priya <priyaanand_27_at_yahoo.co.in> wrote:
> Dear All
> I am trying to run a simulation of dimer each chain has 16 residues.In the
> pdb fileI added TER between the chains but when i use the command edit in
> xleap there is a bond between the chains. but i want two different chains
> and non bonded. I am attaching the pdb file with mail.
> will anybody tell me the mistake.
> Thanks in advance
> Priya
>
>
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