AMBER Archive (2007)

Subject: AMBER: dna forcefield: PARMBSC0

From: Alberto Perez (raist_at_mmb.pcb.ub.es)
Date: Wed Mar 14 2007 - 01:14:36 CST

Hi AMBER users,
The PARMBSC0 version of parm99 force-field for nucleic acids is
available (http://mmb.pcb.ub.es/PARMBSC0/). This slight correction of
the parm99 force-field mantains all their good properties, while
correcting problems arising from incorrect alpha/gamma transitions.

The reference for this work is a Biophysical Journal expected to come out
on June 2007. You can download the online version at BIOFAST:

http://www.biophysj.org/cgi/rapidpdf/biophysj.106.097782v1

Cheers,
Alberto

----------------------------------------------------------------
Alberto Perez
Molecular Modeling & Bioinformatics group

IRBB Parc Cientific de Barcelona | e-mail:raist_at_mmb.pcb.ub.es
Universitat de Barcelona | phone: + 34 93 403 71 55
Josep Samitier,1-5 | FAX: + 34 93 403 71 57
08028 Barcelona (Spain) | phone BSC: +34 93 413 76 02

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