AMBER Archive (2007)

Subject: Re: AMBER: poor performance of sander on a quad-core linux machine

From: David A. Case (case_at_scripps.edu)
Date: Tue Mar 13 2007 - 11:42:48 CST

On Tue, Mar 13, 2007, Lillian chong wrote:

> I have no problems running two independent simulations at the
> same time using sander classic...

Others may have comments about quad core machines, but I wonder what you mean
by "sander classic"? You mention amber 9, so it's certainly worth trying
out pmemd rather than sander, unless there is some reason you can't use the
former.

...regards...dac

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