AMBER Archive (2007)

Subject: Re: AMBER: OpenMPI on MacBook Pro -- problems

From: Mike Summers (summers_at_hhmi.umbc.edu)
Date: Sat Mar 03 2007 - 10:07:28 CST


David,

I re-compiled amber in parallel and now the make test.parallel
runs to completion. I still get an error when I run the script
that I sent earlier in parallel mode, although it runs fine
in serial mode on the same computer. But the errors now indicate
that I don't have things set properly, as you suggested, so I'll
go back and look more carefully at your suggestions.
FYI, the errors I now get are shown below.

Thanks for all your help.

Mike

###################################################
***** Processor 1
***** System must be very inhomogeneous.
***** Readjusting recip sizes.
 In this slab, Atoms found: 20831 Allocated: 15044

mpirun noticed that job rank 0 with PID 7186 on node "localhost" exited on signal 15.
1 additional process aborted (not shown)
| New format PARM file being parsed.
| Version = 1.000 Date = 01/16/07 Time = 16:30:10

###################################################

-- 

********************************* Michael F. Summers Department of Chemistry and Biochemistry and Howard Hughes Medical Institute University of Maryland Baltimore County 1000 Hilltop Circle Baltimore, MD 21250

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