AMBER Archive (2007)

Subject: AMBER: Restraints on modified NA's

From: Seth Lilavivat (sethl_at_gatech.edu)
Date: Fri Mar 02 2007 - 15:56:07 CST

Dear Amber Community,

I am attempting to run some explicitly solvated MD runs on modified NA's with
restraints such as NOE distance and WC distance. I have two questions:

1. I would like to apply the restaints at the very beginning of the MD run, so
what pdb file would I have to give makeDIST_RST?

2. Would I have to modify map.DG-AMBER for my custom residues?

Thanks,
Seth

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