AMBER Archive (2007)

Subject: AMBER: Nanopore simulation

From: subhasish chatterjee (subhas1012_at_gmail.com)
Date: Tue Feb 20 2007 - 22:02:56 CST

Dear All,

I am trying to perform molecular dynamics simulation of nanotube /
nanopore. I was wondering whether it is possible to utilize the
AMBER program to generate the structure of nanotube/ nanopore and all
other necessary parameter files for use in MD simulations.
Afterwards, I would like to study the voltage driven translocation of
bio-molecules through nanopore. I would appreciate any suggestion
regarding the use of AMBER in the MD simulations of nanopores.

Thank you,
Subhasish
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