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AMBER Archive (2007)Subject: AMBER:
From: Beale, John (jbeale_at_stlcop.edu)
I am trying to set up a protein for AMBER 9 using LEaP. I have used
Could not find bond parameters for: SH - SH
Could not find angle parameters for: HS - SH - SH
SH - SH - CT
SH - SH - HS
Could not find proper torsions. No torsion terms for : HS - SH - SH - CT
A total of 217 improper torsions applied.
The *.top and *.crd files are not generated when I do a saveAmberParm.
These parameters seem like nonsense to me. For instance, there are no SH
Can anyone give me some insight on how to work through this?
Thanks!
John Beale
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