AMBER Archive (2007)

Subject: AMBER: carbohydrate-peptide

From: Beale, John (jbeale_at_stlcop.edu)
Date: Mon Feb 19 2007 - 10:09:54 CST

Can someone point me in the right direction? How does one build a
molecule by connecting any arbitrary sugar unit to a peptide structure?
I can easily build the pdb file for the structure that I want in SYBYL,
but it never loads in LEaP. How are the forcefields handled in AMBER
(e.g. FF03 for the peptide and GLYCAMXX for the sugar)? Do you load both
of them at the same time?

 

Thanks!

 

John Beale

 

 

 

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