AMBER Archive (2007)

Subject: RE: AMBER: Installing AMBER v9 in Linux

From: Syed Tarique Moin (tarisyed_at_yahoo.com)
Date: Mon Feb 19 2007 - 04:13:35 CST

It is not working.
g95 is a directory, there is no file like named.

chmod is not working on the directory.

 
--- Ross Walker <ross_at_rosswalker.co.uk> wrote:

> Try
>
> chmod 755 g95
>
> /\
> \/
> |\oss Walker
>
> | HPC Consultant and Staff Scientist |
> | San Diego Supercomputer Center |
> | Tel: +1 858 822 0854 | EMail:-
> ross_at_rosswalker.co.uk |
> | http://www.rosswalker.co.uk | PGP Key available on
> request |
>
> Note: Electronic Mail is not secure, has no
> guarantee of delivery, may not
> be read every day, and should not be used for urgent
> or sensitive issues.
>
> > -----Original Message-----
> > From: owner-amber_at_scripps.edu
> > [mailto:owner-amber_at_scripps.edu] On Behalf Of Syed
> Tarique Moin
> > Sent: Monday, February 19, 2007 00:25
> > To: amber_at_scripps.edu
> > Subject: RE: AMBER: Installing AMBER v9 in Linux
> >
> > Hi,
> > sorry again to disturb you.
> >
> > mcg09:/usr/local/amber9/src # export
> > AMBERHOME=/usr/local/amber9
> > mcg09:/usr/local/amber9/src # export
> > AMBERHOME=/usr/local/amber9 export
> > PATH=$PATH:$AMBERHOME/exe
> > mcg09:/usr/local/amber9/src # ./configure -p4 g95
> > AMBERHOME is set to /usr/local/amber9
> > Setting up Amber configuration file for
> architecture:
> > g95
> > Using parallel communications library: none
> > The MKL_HOME environment variable is not defined.
> >
> > The configuration file, config.h, was successfully
> > created.
> >
> > mcg09:/usr/local/amber9/src # less config.h
> >
> > [2]+ Stopped less config.h
> > mcg09:/usr/local/amber9/src # make serial >&
> > serial.log
> > mcg09:/usr/local/amber9/src # less serial.log
> >
> > Kindly consider it.
> >
> > --- Ross Walker <ross_at_rosswalker.co.uk> wrote:
> >
> > > Hi Syed,
> > >
> > > Here is your error:
> > >
> > > pgf90 -c -tp p7 -O1 -o new2oldparm.o
> > > _new2oldparm.f
> > > pgf90-linux86: LICENSE MANAGER PROBLEM: Cannot
> find
> > > license file
> > > The license files (or server network addresses)
> > > attempted are
> > > listed below. Use LM_LICENSE_FILE to use a
> > > different license file,
> > > or contact your software provider for a license
> > > file.
> > > Feature: pgf90-linux86
> > > Filename: ./license.dat
> > > License path: ./license.dat
> > > FLEXlm error: -1,359. System Error: 2 "No such
> > > file or directory"
> > >
> > > Your license file for the Portland group
> compiler is
> > > not installed properly.
> > > Hence it is refusing to compile anything. You
> should
> > > either sort this out by
> > > checking the pgf90 install instructions or try
> an
> > > alternative compiler. G95
> > > is reasonably good and is available for free.
> See
> > > www.g95.org I would
> > > suggest downloading binaries for your system
> here:
> > > http://ftp.g95.org/ - you
> > > likely want linux x86.
> > >
> > > All the best
> > > Ross
> > >
> > > /\
> > > \/
> > > |\oss Walker
> > >
> > > | HPC Consultant and Staff Scientist |
> > > | San Diego Supercomputer Center |
> > > | Tel: +1 858 822 0854 | EMail:-
> > > ross_at_rosswalker.co.uk |
> > > | http://www.rosswalker.co.uk | PGP Key
> available on
> > > request |
> > >
> > > Note: Electronic Mail is not secure, has no
> > > guarantee of delivery, may not
> > > be read every day, and should not be used for
> urgent
> > > or sensitive issues.
> > >
> > >
> > >
> >
>
--------------------------------------------------------------
> > ---------
> > > The AMBER Mail Reflector
> > > To post, send mail to amber_at_scripps.edu
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> > >
> >
> > Syed Tarique Moin,
> > Junior Research Fellow,
> > H.E.J. Research Institute of Chemistry,
> > International Center for Chemical and Biological
> Sciences,
> > University of Karachi, Karachi-75720, Pakistan
> >
> > tarisyed_at_yahoo.com
> > tarisyed_at_hotmail.com
> >
> >
> >
> >
>
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Syed Tarique Moin,
Junior Research Fellow,
H.E.J. Research Institute of Chemistry,
International Center for Chemical and Biological Sciences,
University of Karachi, Karachi-75720, Pakistan

tarisyed_at_yahoo.com
tarisyed_at_hotmail.com

 
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