AMBER Archive (2007)

Subject: RE: AMBER: Installing AMBER v9 in Linux

From: Syed Tarique Moin (tarisyed_at_yahoo.com)
Date: Mon Feb 19 2007 - 02:25:13 CST

Hi,
sorry again to disturb you.

mcg09:/usr/local/amber9/src # export
AMBERHOME=/usr/local/amber9
mcg09:/usr/local/amber9/src # export
AMBERHOME=/usr/local/amber9 export
PATH=$PATH:$AMBERHOME/exe
mcg09:/usr/local/amber9/src # ./configure -p4 g95
AMBERHOME is set to /usr/local/amber9
Setting up Amber configuration file for architecture:
g95
Using parallel communications library: none
The MKL_HOME environment variable is not defined.

The configuration file, config.h, was successfully
created.

mcg09:/usr/local/amber9/src # less config.h

[2]+ Stopped less config.h
mcg09:/usr/local/amber9/src # make serial >&
serial.log
mcg09:/usr/local/amber9/src # less serial.log

Kindly consider it.

--- Ross Walker <ross_at_rosswalker.co.uk> wrote:

> Hi Syed,
>
> Here is your error:
>
> pgf90 -c -tp p7 -O1 -o new2oldparm.o
> _new2oldparm.f
> pgf90-linux86: LICENSE MANAGER PROBLEM: Cannot find
> license file
> The license files (or server network addresses)
> attempted are
> listed below. Use LM_LICENSE_FILE to use a
> different license file,
> or contact your software provider for a license
> file.
> Feature: pgf90-linux86
> Filename: ./license.dat
> License path: ./license.dat
> FLEXlm error: -1,359. System Error: 2 "No such
> file or directory"
>
> Your license file for the Portland group compiler is
> not installed properly.
> Hence it is refusing to compile anything. You should
> either sort this out by
> checking the pgf90 install instructions or try an
> alternative compiler. G95
> is reasonably good and is available for free. See
> www.g95.org I would
> suggest downloading binaries for your system here:
> http://ftp.g95.org/ - you
> likely want linux x86.
>
> All the best
> Ross
>
> /\
> \/
> |\oss Walker
>
> | HPC Consultant and Staff Scientist |
> | San Diego Supercomputer Center |
> | Tel: +1 858 822 0854 | EMail:-
> ross_at_rosswalker.co.uk |
> | http://www.rosswalker.co.uk | PGP Key available on
> request |
>
> Note: Electronic Mail is not secure, has no
> guarantee of delivery, may not
> be read every day, and should not be used for urgent
> or sensitive issues.
>
>
>
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Syed Tarique Moin,
Junior Research Fellow,
H.E.J. Research Institute of Chemistry,
International Center for Chemical and Biological Sciences,
University of Karachi, Karachi-75720, Pakistan

tarisyed_at_yahoo.com
tarisyed_at_hotmail.com

 
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