AMBER Archive (2007)

Subject: RE: AMBER: Installing AMBER v9 in Linux

From: Syed Tarique Moin (tarisyed_at_yahoo.com)
Date: Sun Feb 18 2007 - 23:51:55 CST

I am using the command

./configure -p4 pgf90

then it forms config.h

then i used the command

make -i serial

then not all suite can be compile correctly. only the
suite given below are compiled. no sander, sander.QMMM
etc

Pin.pm cpinutil.pl makeDIP_RST.dna
parmcal tleap
README crdgrow makeDIP_RST.protein
parmchk top2mol2
am1bcc database makeDIST_RST
prepgen translate
antechamber elsize makeSHF_RST
respgen xaLeap
atomtype espgen mm_pbsa.pl
senergy xleap
bondtype lmodprmtop mm_pbsa_statistics.pl
sviol
calcpka.pl makeANG_RST molsurf
sviol2
charmmgen makeCHIR_RST mopac.sh
teLeap

Thanks in advance

 
--- Ross Walker <ross_at_rosswalker.co.uk> wrote:

> Why don't you post the error message that you see
> after running make serial.
> Then we might be able to help you out.
>
>
> /\
> \/
> |\oss Walker
>
> | HPC Consultant and Staff Scientist |
> | San Diego Supercomputer Center |
> | Tel: +1 858 822 0854 | EMail:-
> ross_at_rosswalker.co.uk |
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> available on request |
>
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>
>
>
>
> _____
>
> From: owner-amber_at_scripps.edu
> [mailto:owner-amber_at_scripps.edu] On Behalf Of
> Syed Tarique Moin
> Sent: Saturday, February 17, 2007 08:12
> To: Amber
> Subject: AMBER: Installing AMBER v9 in Linux
>
>
> Hi,
>
> Anyone could guide me installing amber v9 in suse
> linux 10.1 , how to
> compile everything, whenever i install the amber
> using the command " make
> serial" in the src subdirectory of amber, I find in
> the exe subdirectory,
> some executable not everything like sander, nmode,
> etc (not showing). Kindly
> guide me regarding compiling the amber v9 in
> details.
>
> Thanks in advance.
>
>
>
>
> Syed Tarique Moin,
> Junior Research Fellow,
> H.E.J. Research Institute of Chemistry,
> International Center for Chemical and Biological
> Sciences,
> University of Karachi, Karachi-75720, Pakistan
>
> tarisyed_at_yahoo.com
> tarisyed_at_hotmail.com
>
>
>
> _____
>
> Everyone is raving about the
>
<http://us.rd.yahoo.com/evt=42297/*http://advision.webevents.yahoo.com/mailb
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>
>

Syed Tarique Moin,
Junior Research Fellow,
H.E.J. Research Institute of Chemistry,
International Center for Chemical and Biological Sciences,
University of Karachi, Karachi-75720, Pakistan

tarisyed_at_yahoo.com
tarisyed_at_hotmail.com

 
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