AMBER Archive (2007)

Subject: AMBER: Modified nucleotides

From: mathew k varghese (mathew_kvarghese_at_yahoo.co.in)
Date: Mon Feb 12 2007 - 22:44:31 CST


Dear AMBER users,

I am planning to do some MD simulations of modified nucleic acids. Is it reasonable to use the am1-bcc charges for the modified nucleotides?

Thanks in advance

Mathew K Varghese

/\/\athew

Mathew K Varghese
Research Scholar
School of Pure and Applied Physics
M.G.University
Kottayam, Kerala
India

email mathew_kvarghese_at_yahoo.co.in

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