AMBER Archive (2007)

Subject: Re: AMBER: extracting coordinate from crd file

From: David A. Case (case_at_scripps.edu)
Date: Sat Feb 10 2007 - 10:08:28 CST

On Sat, Feb 10, 2007, gurpreet singh wrote:

>
> But I want to know one thing, My Amber version is 9 and When I went through
> the forum I found that there is one module called CARNAL and with that it
> seems that we can extract the coordinates of a particular amino acid over a
> period of time from the trajectory. I don't know whether I have that option
> in my Amber version or not.

Use ptraj, and its "strip" command to remove everything but the atom(s)
you want; then save the new trajectory.

...hope this helps...dac

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