AMBER Archive (2007)

Subject: RE: AMBER: Compiling Amber 7

From: David J. Powers (dpowers_at_nmu.edu)
Date: Thu Feb 08 2007 - 13:27:41 CST

Thanks, Ross. Your suggestion for LOADLIB did the trick. AMBER now
builds completely.

At 08:30 AM 2/8/2007 -0800, you wrote:
>Dear David,
>
> > I set the environment variables, AMBERHOME and MPICH_HOME.
> > During the
> > "make install"
> > I got an error making sander. The errors were specifically:
> > undefined reference to 'pthread_getspecific'
> > and undefined reference to 'pthread_getspecific'
>
>Try adding -lpthread to the loadlib line. I.e.:
>
>setenv LOADLIB "-lm -L$MPICH_LIBDIR -l$MPICH_LIB -lpthread"
>
>The other option, assuming that you have your mpich paths set up correctly
>is to replace g77 with mpif77. This is a wrapper for the compiling mpi
>programs and should append the correct library options automatically.
>
>All the best
>Ross
>
>/\
>\/
>|\oss Walker
>
>| HPC Consultant and Staff Scientist |
>| San Diego Supercomputer Center |
>| Tel: +1 858 822 0854 | EMail:- ross_at_rosswalker.co.uk |
>| http://www.rosswalker.co.uk | PGP Key available on request |
>
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