AMBER Archive (2007)

Subject: AMBER: Help!! I cannot perform the ambpdb

From: WANG,YING (wangying_at_ufl.edu)
Date: Wed Feb 07 2007 - 08:03:07 CST

Hi, dear amber users,
Sorry to interrupt all of you.
I'm runing a software which is ambpdb of amber packdge. but I
don't know why the run time of my job is always 0:00:00 and my pdb
result is zero too. and there is a warnning in my output file, as
below.
| New format PARM file being parsed.
| Version = 1.000 Date = 02/06/07 Time = 11:40:55
mpirun: killing job...
--------------------------------------------------------------------------
WARNING: A process refused to die!

Host: hpc044.local
PID: 4490

This process may still be running and/or consuming resources.
--------------------------------------------------------------------------

I del my job and run again but it didn't work. I log out and log
in the PBS systerm again but it didn't work too........... :(
Could you help me?.......... Sorry, really sorry to trouble
you....

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