AMBER Archive (2007)

Subject: AMBER: antechamber for topology file

From: deepti nayar (deepti.icgeb_at_gmail.com)
Date: Wed Feb 07 2007 - 04:42:51 CST

hi

i have to simulate a peptide containing a non standard residue. ito be
more precise, i have to simulate a dipeptide containing dehydroamino
acid residue. i have to simulate a peptide containing a
dehydrophenylalanine and dehydro del phenylalanine residue. so if i
load the standard force field ff99. how should i make a topology file
for ths non standard residue. i guess i have to use antechamber as
some of u told me. what all is required for making a topology file in
antechamber.

kindly help

deepti
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