AMBER Archive (2007)

Subject: Re: AMBER: force fields

From: deepti nayar (deepti.icgeb_at_gmail.com)
Date: Mon Feb 05 2007 - 23:37:05 CST

hi

i have to carry out simulation of peptides containing
alpha,beta-dehydroamino acid residues. (basically dehydrophenylalanine
residues )bt before that i have to make force field for phe and del
phe residues. i have all the parameters (bond angle,bond
length,hybridisation) which are required for building force field for
phe and del phe residues.

kindly tell me if there is any prevously available force field for phe
residue. i dont have any ides as to how to make a force field on my
own. kindly help

thanx
deepti

On 2/5/07, Yong Duan <duan_at_ucdavis.edu> wrote:
>
> This is a bit unusual. Can you elaborate?
>
> yong
> -----Original Message-----
> From: owner-amber_at_scripps.edu [mailto:owner-amber_at_scripps.edu] On Behalf Of
> deepti nayar
> Sent: Sunday, February 04, 2007 11:05 PM
> To: amber_at_scripps.edu
> Subject: AMBER: force fields
>
>
> hi
>
> i am new to amber9. can any one plz guide me how to make a force
> field? i dont want to use inbuilt force fields of amber and so want to
> build a new one for my molecule myself.
>
> thanx
> deepti
>
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