AMBER Archive (2007)

Subject: AMBER: Unable to compile amber9

From: Vinh To (vto_at_evergrid.com)
Date: Wed Jan 24 2007 - 08:41:06 CST


Hi,

First, this is where I am at:
0) I applied bug_fix_all as of 01-23-2007.
1) Compiling amber9 with gfortran, g95 so far. None of them succeeded.
2) Modified $AMBERHOME/src/arpack/stat.h: "/*double precision t0, t1,
t2, t3, t4, t5*/" to "/*real t0, t1, t2, t3, t4, t5*/"
3) Replaced some macro/definition with (len=*)////

I tried with and without 2) and 3), which got me further but now I
completely stuck at the following (see the end of the email). I compiled
tinker library for amoeba support but the missing symbols dont seem to
be in there.

Let me know if you have further fixing patches. Thank you for the
assistance.

Vinh.

{{{
Starting installation of Amber9 (parallel) at Wed Jan 24 09:37:21 EST 2007.
cd sander; make parallel
make[1]: Entering directory `/nfs/share/vto/tmp/amber9-mod/src/sander'
./checkparconf
cpp -traditional -I/nfs/share/vto/cdi/include -P -DMPI
-xassembler-with-cpp -Dsecond=ambsecond amoeba_interface.f >
_amoeba_interface.f
gfortran -c -O3 -fno-second-underscore -march=nocona -ffree-form -o
amoeba_interface.o _amoeba_interface.f
 In file _amoeba_interface.f:133

  use amoeba_bonds, only : AM_BONDS_broadcast
                         1
Error: Symbol 'am_bonds_broadcast' referenced at (1) not found in module
'amoeba_bonds'
 In file _amoeba_interface.f:134

  use amoeba_ureyb, only : AM_UREYB_broadcast
                         1

Error: Symbol 'am_ureyb_broadcast' referenced at (1) not found in module
'amoeba_ureyb'
 In file _amoeba_interface.f:135

  use amoeba_reg_angles, only : AM_REG_ANGLES_broadcast
                              1
Error: Symbol 'am_reg_angles_broadcast' referenced at (1) not found in
module 'amoeba_reg_angles'
 In file _amoeba_interface.f:136

  use amoeba_trig_angles, only : AM_TRIG_ANGLES_broadcast
                               1
Error: Symbol 'am_trig_angles_broadcast' referenced at (1) not found in
module 'amoeba_trig_angles'
 In file _amoeba_interface.f:137

  use amoeba_opbend_angles, only : AM_OPBEND_ANGLES_broadcast
                                 1
Error: Symbol 'am_opbend_angles_broadcast' referenced at (1) not found
in module 'amoeba_opbend_angles'
 In file _amoeba_interface.f:138

  use amoeba_torsions, only : AM_TORSIONS_broadcast
                            1
Error: Symbol 'am_torsions_broadcast' referenced at (1) not found in
module 'amoeba_torsions'
 In file _amoeba_interface.f:139

  use amoeba_pitorsions, only : AM_PITORSIONS_broadcast
                              1
Error: Symbol 'am_pitorsions_broadcast' referenced at (1) not found in
module 'amoeba_pitorsions'
 In file _amoeba_interface.f:140

  use amoeba_stretch_bend, only : AM_STRETCH_BEND_broadcast
                                1
Error: Symbol 'am_stretch_bend_broadcast' referenced at (1) not found in
module 'amoeba_stretch_bend'
 In file _amoeba_interface.f:141

  use amoeba_torsion_torsion, only : AM_TOR_TOR_broadcast
                                   1
Error: Symbol 'am_tor_tor_broadcast' referenced at (1) not found in
module 'amoeba_torsion_torsion'
 In file _amoeba_interface.f:430

  use amoeba_multipoles, only : AM_MPOLE_broadcast
                              1
Error: Symbol 'am_mpole_broadcast' referenced at (1) not found in module
'amoeba_multipoles'
make[1]: *** [amoeba_interface.o] Error 1
make[1]: Leaving directory `/nfs/share/vto/tmp/amber9-mod/src/sander'
make: *** [parallel] Error 2

}}}

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